#include "dwi/tractography/SIFT/sifter.h"

Inheritance diagram for MR::DWI::Tractography::SIFT::SIFTer:

Classes
class	TrackGradientCalculator

Public Member Functions
	SIFTer (Image< float > &i, const DWI::Directions::FastLookupSet &d)

	SIFTer (const SIFTer &that)=delete

	~SIFTer ()

void	perform_filtering ()

void	output_filtered_tracks (const std::string &, const std::string &) const

void	output_selection (const std::string &) const

void	set_term_number (const track_t i)

void	set_term_ratio (const float i)

void	set_term_mu (const float i)

void	set_csv_path (const std::string &i)

void	set_regular_outputs (const vector< uint32_t > &, const bool)

void	test_sorting_block_size (const size_t) const

Public Member Functions inherited from MR::DWI::Tractography::SIFT::Model< Fixel >
template<class Set >
	Model (Set &dwi, const DWI::Directions::FastLookupSet &dirs)

	Model (const Model &that)=delete

virtual	~Model ()

void	map_streamlines (const std::string &)

void	remove_excluded_fixels ()

void	check_TD ()

track_t	num_tracks () const

void	output_non_contributing_streamlines (const std::string &) const

Public Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
	ModelBase (Image< float > &dwi, const DWI::Directions::FastLookupSet &dirs)

	ModelBase (const ModelBase &)=delete

virtual	~ModelBase ()

void	perform_FOD_segmentation (Image< float > &)

void	scale_FDs_by_GM ()

void	map_streamlines (const std::string &)

virtual bool	operator() (const FMLS::FOD_lobes &in)

virtual bool	operator() (const Mapping::SetDixel &in)

default_type	calc_cost_function () const

default_type	mu () const

bool	have_act_data () const

void	output_proc_mask (const std::string &)

void	output_5tt_image (const std::string &)

void	output_all_debug_images (const std::string &) const

Public Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
	Fixel_TD_map (const Header &H, const DWI::Directions::FastLookupSet &directions)

	Fixel_TD_map (const Fixel_TD_map &)=delete

virtual	~Fixel_TD_map ()

virtual bool	operator() (const SetDixel &in)

Protected Member Functions
double	calc_roc_cost_function () const

double	calc_gradient (const track_t, const double, const double) const

Protected Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
void	output_target_image (const std::string &) const

void	output_target_image_sh (const std::string &) const

void	output_target_image_fixel (const std::string &) const

void	output_tdi (const std::string &) const

void	output_tdi_null_lobes (const std::string &) const

void	output_tdi_sh (const std::string &) const

void	output_tdi_fixel (const std::string &) const

void	output_error_images (const std::string &, const std::string &, const std::string &) const

void	output_error_fixel_images (const std::string &, const std::string &) const

void	output_scatterplot (const std::string &) const

void	output_fixel_count_image (const std::string &) const

void	output_untracked_fixels (const std::string &, const std::string &) const

Protected Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
size_t	dixel2fixel (const Dixel &) const

Protected Attributes
vector< track_t >	output_at_counts

bool	output_debug

track_t	term_number

float	term_ratio

double	term_mu

bool	enforce_quantisation

std::string	csv_path

Protected Attributes inherited from MR::DWI::Tractography::SIFT::Model< Fixel >
std::string	tck_file_path

vector< TrackContribution * >	contributions

Protected Attributes inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
Image< float >	act_5tt

Image< float >	proc_mask

default_type	FOD_sum

default_type	TD_sum

bool	have_null_lobes

Protected Attributes inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
const DWI::Directions::FastLookupSet &	dirs

Protected Attributes inherited from MR::DWI::Fixel_map< Fixel >
vector< Fixel >	fixels

Detailed Description

Definition at line 48 of file sifter.h.

Constructor & Destructor Documentation

◆ SIFTer() [1/2]

MR::DWI::Tractography::SIFT::SIFTer::SIFTer	(	Image< float > &	i,
		const DWI::Directions::FastLookupSet &	d
	)

inline

Definition at line 58 of file sifter.h.

◆ SIFTer() [2/2]

MR::DWI::Tractography::SIFT::SIFTer::SIFTer ( const SIFTer & that )

delete

◆ ~SIFTer()

MR::DWI::Tractography::SIFT::SIFTer::~SIFTer ( )

inline

Definition at line 68 of file sifter.h.

Member Function Documentation

◆ calc_gradient()

double MR::DWI::Tractography::SIFT::SIFTer::calc_gradient	(	const	track_t,
		const double	,
		const double
	)		const

protected

◆ calc_roc_cost_function()

double MR::DWI::Tractography::SIFT::SIFTer::calc_roc_cost_function ( ) const

protected

◆ output_filtered_tracks()

void MR::DWI::Tractography::SIFT::SIFTer::output_filtered_tracks	(	const std::string &	,
		const std::string &
	)		const

◆ output_selection()

void MR::DWI::Tractography::SIFT::SIFTer::output_selection ( const std::string & ) const

◆ perform_filtering()

void MR::DWI::Tractography::SIFT::SIFTer::perform_filtering ( )

◆ set_csv_path()

void MR::DWI::Tractography::SIFT::SIFTer::set_csv_path ( const std::string & i )

inline

Definition at line 80 of file sifter.h.

◆ set_regular_outputs()

void MR::DWI::Tractography::SIFT::SIFTer::set_regular_outputs	(	const vector< uint32_t > &	,
		const bool
	)

◆ set_term_mu()

void MR::DWI::Tractography::SIFT::SIFTer::set_term_mu ( const float i )

inline

Definition at line 79 of file sifter.h.

◆ set_term_number()

void MR::DWI::Tractography::SIFT::SIFTer::set_term_number ( const track_t i )

inline

Definition at line 77 of file sifter.h.

◆ set_term_ratio()

void MR::DWI::Tractography::SIFT::SIFTer::set_term_ratio ( const float i )

inline

Definition at line 78 of file sifter.h.

◆ test_sorting_block_size()

void MR::DWI::Tractography::SIFT::SIFTer::test_sorting_block_size ( const size_t ) const

Member Data Documentation

◆ csv_path

std::string MR::DWI::Tractography::SIFT::SIFTer::csv_path

protected

Definition at line 106 of file sifter.h.

◆ enforce_quantisation

bool MR::DWI::Tractography::SIFT::SIFTer::enforce_quantisation

protected

Definition at line 105 of file sifter.h.

◆ output_at_counts

vector<track_t> MR::DWI::Tractography::SIFT::SIFTer::output_at_counts

protected

Definition at line 100 of file sifter.h.

◆ output_debug

bool MR::DWI::Tractography::SIFT::SIFTer::output_debug

protected

Definition at line 101 of file sifter.h.

◆ term_mu

double MR::DWI::Tractography::SIFT::SIFTer::term_mu

protected

Definition at line 104 of file sifter.h.

◆ term_number

track_t MR::DWI::Tractography::SIFT::SIFTer::term_number

protected

Definition at line 102 of file sifter.h.

◆ term_ratio

float MR::DWI::Tractography::SIFT::SIFTer::term_ratio

protected

Definition at line 103 of file sifter.h.

The documentation for this class was generated from the following file:

src/dwi/tractography/SIFT/sifter.h

Classes

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ SIFTer() [1/2]

◆ SIFTer() [2/2]

◆ ~SIFTer()

Member Function Documentation

◆ calc_gradient()

◆ calc_roc_cost_function()

◆ output_filtered_tracks()

◆ output_selection()

◆ perform_filtering()

◆ set_csv_path()

◆ set_regular_outputs()

◆ set_term_mu()

◆ set_term_number()

◆ set_term_ratio()

◆ test_sorting_block_size()

Member Data Documentation

◆ csv_path

◆ enforce_quantisation

◆ output_at_counts

◆ output_debug

◆ term_mu

◆ term_number

◆ term_ratio