#include "dwi/tractography/SIFT/model_base.h"

Inheritance diagram for MR::DWI::Tractography::SIFT::ModelBase< Fixel >:

Public Member Functions
	ModelBase (Image< float > &dwi, const DWI::Directions::FastLookupSet &dirs)

	ModelBase (const ModelBase &)=delete

virtual	~ModelBase ()

void	perform_FOD_segmentation (Image< float > &)

void	scale_FDs_by_GM ()

void	map_streamlines (const std::string &)

virtual bool	operator() (const FMLS::FOD_lobes &in)

virtual bool	operator() (const Mapping::SetDixel &in)

default_type	calc_cost_function () const

default_type	mu () const

bool	have_act_data () const

void	output_proc_mask (const std::string &)

void	output_5tt_image (const std::string &)

void	output_all_debug_images (const std::string &) const

Public Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
	Fixel_TD_map (const Header &H, const DWI::Directions::FastLookupSet &directions)

	Fixel_TD_map (const Fixel_TD_map &)=delete

virtual	~Fixel_TD_map ()

virtual bool	operator() (const SetDixel &in)

Protected Member Functions
void	output_target_image (const std::string &) const

void	output_target_image_sh (const std::string &) const

void	output_target_image_fixel (const std::string &) const

void	output_tdi (const std::string &) const

void	output_tdi_null_lobes (const std::string &) const

void	output_tdi_sh (const std::string &) const

void	output_tdi_fixel (const std::string &) const

void	output_error_images (const std::string &, const std::string &, const std::string &) const

void	output_error_fixel_images (const std::string &, const std::string &) const

void	output_scatterplot (const std::string &) const

void	output_fixel_count_image (const std::string &) const

void	output_untracked_fixels (const std::string &, const std::string &) const

Protected Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
size_t	dixel2fixel (const Dixel &) const

Protected Attributes
Image< float >	act_5tt

Image< float >	proc_mask

default_type	FOD_sum

default_type	TD_sum

bool	have_null_lobes

Protected Attributes inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
const DWI::Directions::FastLookupSet &	dirs

Protected Attributes inherited from MR::DWI::Fixel_map< Fixel >
vector< Fixel >	fixels

Detailed Description

template<class Fixel>
class MR::DWI::Tractography::SIFT::ModelBase< Fixel >

Definition at line 124 of file model_base.h.

Constructor & Destructor Documentation

◆ ModelBase() [1/2]

template<class Fixel >

MR::DWI::Tractography::SIFT::ModelBase< Fixel >::ModelBase	(	Image< float > &	dwi,
		const DWI::Directions::FastLookupSet &	dirs
	)

inline

Definition at line 132 of file model_base.h.

◆ ModelBase() [2/2]

template<class Fixel >

MR::DWI::Tractography::SIFT::ModelBase< Fixel >::ModelBase ( const ModelBase< Fixel > & )

delete

◆ ~ModelBase()

template<class Fixel >

virtual MR::DWI::Tractography::SIFT::ModelBase< Fixel >::~ModelBase ( )

inlinevirtual

Definition at line 143 of file model_base.h.

Member Function Documentation

◆ calc_cost_function()

template<class Fixel >

default_type MR::DWI::Tractography::SIFT::ModelBase< Fixel >::calc_cost_function

Definition at line 303 of file model_base.h.

◆ have_act_data()

template<class Fixel >

bool MR::DWI::Tractography::SIFT::ModelBase< Fixel >::have_act_data ( ) const

inline

Definition at line 156 of file model_base.h.

◆ map_streamlines()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::map_streamlines ( const std::string & path )

Definition at line 234 of file model_base.h.

◆ mu()

template<class Fixel >

default_type MR::DWI::Tractography::SIFT::ModelBase< Fixel >::mu ( ) const

inline

Definition at line 155 of file model_base.h.

◆ operator()() [1/2]

template<class Fixel >

bool MR::DWI::Tractography::SIFT::ModelBase< Fixel >::operator() ( const FMLS::FOD_lobes & in )

virtual

Reimplemented from MR::DWI::Fixel_map< Fixel >.

Reimplemented in MR::DWI::Tractography::Seeding::Dynamic.

Definition at line 261 of file model_base.h.

◆ operator()() [2/2]

template<class Fixel >

bool MR::DWI::Tractography::SIFT::ModelBase< Fixel >::operator() ( const Mapping::SetDixel & in )

virtual

Reimplemented from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >.

Reimplemented in MR::DWI::Tractography::Seeding::Dynamic.

Definition at line 285 of file model_base.h.

◆ output_5tt_image()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_5tt_image ( const std::string & path )

Definition at line 322 of file model_base.h.

◆ output_all_debug_images()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_all_debug_images ( const std::string & prefix ) const

Definition at line 333 of file model_base.h.

◆ output_error_fixel_images()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_error_fixel_images	(	const std::string &	diff_path,
		const std::string &	cost_path
	)		const

protected

Definition at line 244 of file output.h.

◆ output_error_images()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_error_images	(	const std::string &	max_abs_diff_path,
		const std::string &	diff_path,
		const std::string &	cost_path
	)		const

protected

Definition at line 216 of file output.h.

◆ output_fixel_count_image()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_fixel_count_image ( const std::string & path ) const

protected

Definition at line 284 of file output.h.

◆ output_proc_mask()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_proc_mask ( const std::string & path )

Definition at line 315 of file model_base.h.

◆ output_scatterplot()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_scatterplot ( const std::string & path ) const

protected

Definition at line 272 of file output.h.

◆ output_target_image()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_target_image ( const std::string & path ) const

protected

Definition at line 49 of file output.h.

◆ output_target_image_fixel()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_target_image_fixel ( const std::string & path ) const

protected

Definition at line 98 of file output.h.

◆ output_target_image_sh()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_target_image_sh ( const std::string & path ) const

protected

Definition at line 66 of file output.h.

◆ output_tdi()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_tdi ( const std::string & path ) const

protected

Definition at line 121 of file output.h.

◆ output_tdi_fixel()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_tdi_fixel ( const std::string & path ) const

protected

Definition at line 192 of file output.h.

◆ output_tdi_null_lobes()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_tdi_null_lobes ( const std::string & path ) const

protected

Definition at line 139 of file output.h.

◆ output_tdi_sh()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_tdi_sh ( const std::string & path ) const

protected

Definition at line 159 of file output.h.

◆ output_untracked_fixels()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::output_untracked_fixels	(	const std::string &	path_count,
		const std::string &	path_amps
	)		const

protected

Definition at line 299 of file output.h.

◆ perform_FOD_segmentation()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::perform_FOD_segmentation ( Image< float > & data )

Definition at line 194 of file model_base.h.

◆ scale_FDs_by_GM()

template<class Fixel >

void MR::DWI::Tractography::SIFT::ModelBase< Fixel >::scale_FDs_by_GM

Definition at line 209 of file model_base.h.

Member Data Documentation

◆ act_5tt

template<class Fixel >

Image<float> MR::DWI::Tractography::SIFT::ModelBase< Fixel >::act_5tt

protected

Definition at line 170 of file model_base.h.

◆ FOD_sum

template<class Fixel >

default_type MR::DWI::Tractography::SIFT::ModelBase< Fixel >::FOD_sum

protected

Definition at line 171 of file model_base.h.

◆ have_null_lobes

template<class Fixel >

bool MR::DWI::Tractography::SIFT::ModelBase< Fixel >::have_null_lobes

protected

Definition at line 172 of file model_base.h.

◆ proc_mask

template<class Fixel >

Image<float> MR::DWI::Tractography::SIFT::ModelBase< Fixel >::proc_mask

protected

Definition at line 170 of file model_base.h.

◆ TD_sum

template<class Fixel >

default_type MR::DWI::Tractography::SIFT::ModelBase< Fixel >::TD_sum

protected

Definition at line 171 of file model_base.h.

The documentation for this class was generated from the following files:

src/dwi/tractography/SIFT/model_base.h
src/dwi/tractography/SIFT/output.h

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ ModelBase() [1/2]

◆ ModelBase() [2/2]

◆ ~ModelBase()

Member Function Documentation

◆ calc_cost_function()

◆ have_act_data()

◆ map_streamlines()

◆ mu()

◆ operator()() [1/2]

◆ operator()() [2/2]

◆ output_5tt_image()

◆ output_all_debug_images()

◆ output_error_fixel_images()

◆ output_error_images()

◆ output_fixel_count_image()

◆ output_proc_mask()

◆ output_scatterplot()

◆ output_target_image()

◆ output_target_image_fixel()

◆ output_target_image_sh()

◆ output_tdi()

◆ output_tdi_fixel()

◆ output_tdi_null_lobes()

◆ output_tdi_sh()

◆ output_untracked_fixels()

◆ perform_FOD_segmentation()

◆ scale_FDs_by_GM()

Member Data Documentation

◆ act_5tt

◆ FOD_sum

◆ have_null_lobes

◆ proc_mask

◆ TD_sum