MR::DWI::Tractography::SIFT::Model< Fixel > Class Template Reference

#include "dwi/tractography/SIFT/model.h"

Inheritance diagram for MR::DWI::Tractography::SIFT::Model< Fixel >:

Public Member Functions
template<class Set >
	Model (Set &dwi, const DWI::Directions::FastLookupSet &dirs)
	Model (const Model &that)=delete
virtual	~Model ()
void	map_streamlines (const std::string &)
void	remove_excluded_fixels ()
void	check_TD ()
track_t	num_tracks () const
void	output_non_contributing_streamlines (const std::string &) const
Public Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
	ModelBase (Image< float > &dwi, const DWI::Directions::FastLookupSet &dirs)
	ModelBase (const ModelBase &)=delete
virtual	~ModelBase ()
void	perform_FOD_segmentation (Image< float > &)
void	scale_FDs_by_GM ()
void	map_streamlines (const std::string &)
virtual bool	operator() (const FMLS::FOD_lobes &in)
virtual bool	operator() (const Mapping::SetDixel &in)
default_type	calc_cost_function () const
default_type	mu () const
bool	have_act_data () const
void	output_proc_mask (const std::string &)
void	output_5tt_image (const std::string &)
void	output_all_debug_images (const std::string &) const
Public Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
	Fixel_TD_map (const Header &H, const DWI::Directions::FastLookupSet &directions)
	Fixel_TD_map (const Fixel_TD_map &)=delete
virtual	~Fixel_TD_map ()
virtual bool	operator() (const SetDixel &in)

Protected Attributes
std::string	tck_file_path
vector< TrackContribution * >	contributions
Protected Attributes inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
Image< float >	act_5tt
Image< float >	proc_mask
default_type	FOD_sum
default_type	TD_sum
bool	have_null_lobes
Protected Attributes inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
const DWI::Directions::FastLookupSet &	dirs
Protected Attributes inherited from MR::DWI::Fixel_map< Fixel >
vector< Fixel >	fixels

Additional Inherited Members
Protected Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
void	output_target_image (const std::string &) const
void	output_target_image_sh (const std::string &) const
void	output_target_image_fixel (const std::string &) const
void	output_tdi (const std::string &) const
void	output_tdi_null_lobes (const std::string &) const
void	output_tdi_sh (const std::string &) const
void	output_tdi_fixel (const std::string &) const
void	output_error_images (const std::string &, const std::string &, const std::string &) const
void	output_error_fixel_images (const std::string &, const std::string &) const
void	output_scatterplot (const std::string &) const
void	output_fixel_count_image (const std::string &) const
void	output_untracked_fixels (const std::string &, const std::string &) const
Protected Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
size_t	dixel2fixel (const Dixel &) const

Detailed Description

template<class Fixel>
class MR::DWI::Tractography::SIFT::Model< Fixel >

Definition at line 58 of file model.h.

Constructor & Destructor Documentation

Model() [1/2]

template<class Fixel >

template<class Set >

MR::DWI::Tractography::SIFT::Model< Fixel >::Model ( Set &  dwi, const DWI::Directions::FastLookupSet &  dirs  )

inline

Definition at line 67 of file model.h.

Model() [2/2]

template<class Fixel >

MR::DWI::Tractography::SIFT::Model< Fixel >::Model ( const Model< Fixel > &  that )

delete

~Model()

template<class Fixel >

MR::DWI::Tractography::SIFT::Model< Fixel >::~Model

virtual

Definition at line 159 of file model.h.

Member Function Documentation

check_TD()

template<class Fixel >

void MR::DWI::Tractography::SIFT::Model< Fixel >::check_TD

Definition at line 277 of file model.h.

map_streamlines()

template<class Fixel >

void MR::DWI::Tractography::SIFT::Model< Fixel >::map_streamlines

(

const std::string &

path

)

Definition at line 173 of file model.h.

num_tracks()

template<class Fixel >

track_t MR::DWI::Tractography::SIFT::Model< Fixel >::num_tracks ( ) const

inline

Definition at line 85 of file model.h.

output_non_contributing_streamlines()

template<class Fixel >

void MR::DWI::Tractography::SIFT::Model< Fixel >::output_non_contributing_streamlines

(

const std::string &

output_path

)

const

Definition at line 300 of file model.h.

remove_excluded_fixels()

template<class Fixel >

void MR::DWI::Tractography::SIFT::Model< Fixel >::remove_excluded_fixels

Definition at line 214 of file model.h.

Member Data Documentation

contributions

template<class Fixel >

vector<TrackContribution*> MR::DWI::Tractography::SIFT::Model< Fixel >::contributions

protected

Definition at line 95 of file model.h.

tck_file_path

template<class Fixel >

std::string MR::DWI::Tractography::SIFT::Model< Fixel >::tck_file_path

protected

Definition at line 94 of file model.h.

---

The documentation for this class was generated from the following file:

• src/dwi/tractography/SIFT/model.h