MR::Filter::DWIBrainMask Class Reference

a filter to compute a whole brain mask from a DWI image. More...

#include "filter/dwi_brain_mask.h"

Inheritance diagram for MR::Filter::DWIBrainMask:

Protected Attributes
const Eigen::MatrixXd &	grad
Protected Attributes inherited from MR::Filter::Base
std::string	message
Protected Attributes inherited from MR::Header
vector< Axis >	axes_
transform_type	transform_
std::string	name_
KeyValues	keyval_
const char *	format_
std::unique_ptr< ImageIO::Base >	io
	additional information relevant for images stored on file More...
DataType	datatype_
	the type of the data as stored on file More...
default_type	offset_
	the values by which to scale the intensities More...
default_type	scale_
std::array< size_t, 3 >	realign_perm_
std::array< bool, 3 >	realign_flip_

Additional Inherited Members
Protected Member Functions inherited from MR::Header
void	acquire_io (Header &H)
void	check (const Header &H) const
void	realign_transform ()
	realign transform to match RAS coordinate system as closely as possible More...
void	sanitise_voxel_sizes ()
void	sanitise_transform ()
void	sanitise_strides ()

Detailed Description

a filter to compute a whole brain mask from a DWI image.

Both diffusion weighted and b=0 volumes are required to obtain a mask that includes both brain tissue and CSF.

Typical usage:

auto input = Image<value_type>::open (argument[0]);
auto grad = DWI::get_DW_scheme (input);
Filter::DWIBrainMask dwi_brain_mask_filter (input, grad);
auto output = Image<bool>::create (argument[1], dwi_brain_mask_filter);
dwi_brain_mask_filter (input, output);

Definition at line 57 of file dwi_brain_mask.h.

Member Data Documentation

grad

const Eigen::MatrixXd& MR::Filter::DWIBrainMask::grad

protected

Definition at line 150 of file dwi_brain_mask.h.

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The documentation for this class was generated from the following file:

• core/filter/dwi_brain_mask.h