Blog

This year's posts

  • @thijsdhollander

    MRtrix 3.0 (release candidate 2)

    The last few months of work have resulted in another batch of updated features. The most important changes motivating this second release candidate relate to the bias field correction and intensity normalisation process previously performed by the mtbin command, which...


  • @Lestropie

    Dwipreproc and inter-protocol motion

    Hi all, There is an ongoing issue / discussion around the dwipreproc script, particularly with regards to a common use case: combination of the -rpe_pair and -se_epi options to provide reversed phase-encode spin-echo images with which to estimate the inhomogeneity...


  • @jdtournier

    MRtrix3 version 3.0 (release candidate 1)

    MRtrix3 is finally about to come out of beta status and hit full release! This is the first release candidate for our forthcoming version 3.0 of MRtrix3, the result of many months of work, with many new features and improvements...


2016

  • @Lestropie

    Reproducible Neuroscience at Stanford University

    Hello MRtrixers, In the spirit of increased public engagement, I thought I’d let everybody know about what’s been happening in the MRtrix3 universe of late. Last week, myself and @Dave attended the coding sprint for the Stanford Centre for Reproducible...


  • @Lestropie

    Scripts: Help pages and algoritms

    Hi all, I’ve just pushed some more changes to the Python scripts and scripting library provided with MRtrix3. I thought that in addition to highlighting those changes, I’d also take the chance to draw attention to some of the work...


  • @jdtournier

    ISMRM Diffusion MRI Workshop: 12-16 September, 2016

    The next ISMRM Diffusion MRI Workshop “Breaking Barriers in Diffusion MRI” is coming up! This will be held in Lisbon, Portugal, on September 12-16. It’s a great forum to meet and share ideas with each other and leaders in the...


  • @Lestropie

    MRtrix3 version incremented to 0.3.15

    Hi MRtrixers, I’ve just pushed a whole load of changes to the master branch of the GitHub repository. Since there’s quite a few things in there that influence either the interfaces to commands, or the default behaviour of certain operations,...


  • @Lestropie

    Heuristic scaling of connectome edge strengths

    Hi all, Since this topic has arisen in a number of separate discussions recently, I thought I’d post some semi-coherent ramblings regarding the available scaling mechanisms in the tck2connectome command. Note that these are personal opinions and are not necessarily...


  • @jdtournier

    About the Blog category

    Blogs from the MRtrix3 team and collaborators!


  • @draffelt

    Image registration and fixel-based analysis now available in MRtrix!

    We are proud to announce that MRtrix now includes commands for image registration and fixel-based analysis! Image registration The new mrregister command can be used to perform robust rigid, linear and non-linear registration. In a similar vein to Avants et...


  • @jdtournier

    Bug in FSL bvecs handling

    We have recently identified a bug in our import & export of FSL-style bvecs files. This caused a flip of the x component for some (but not all) images, leading to grossly incorrect fibre orientations and tractography. While most users...


  • @jdtournier

    Major update to MRtrix3

    We have just pushed a major update for MRtrix3, constituting over a year’s work from the developers in preparation for the official software release. Most of these changes will in fact be transparent to users: invoking commands, processing data etc....


  • @jdtournier

    Mrtrix.org is now live!

    MRtrix3 now has a new website! After some earlier struggles, we have switched to GitHub Pages for improved security and simpler content management. This site will act as a central portal for the various MRtrix3-related activities: downloading and installing MRtrix3...


  • @jdtournier

    MRtrix3 has a new forum!

    We have set up a new forum for MRtrix3, which we hope will provide a much better experience for our users than the current Google+ community page. This new forum is powered by Discourse, and provides vastly improved features. You...


  • @jdtournier

    About the announcements category

    This category is for announcements from the MRtrix3 team. Only MRtrix3 team members can create topics in this category.