Classes
class	ComposeDispKernel

class	ComposeHalfwayKernel

class	ComposeLinearDeformKernel

class	ComposeLinearDispKernel

Functions
template<class DisplacementFieldType , class DeformationFieldType >
FORCE_INLINE void	compose_linear_displacement (const transform_type &transform, DisplacementFieldType &disp_in, DeformationFieldType &deform_out)

template<class InputDeformationFieldType , class OutputDeformationFieldType >
FORCE_INLINE void	compose_linear_deformation (const transform_type &transform, InputDeformationFieldType &deform_in, OutputDeformationFieldType &deform_out)

FORCE_INLINE void	update_displacement (Image< default_type > &input, Image< default_type > &update, Image< default_type > &output, default_type step=1.0)

FORCE_INLINE void	update_displacement_scaling_and_squaring (Image< default_type > &input, Image< default_type > &update, Image< default_type > &output, const default_type step=1.0)

template<class DeformationField1Type , class DeformationField2Type , class OutputDeformationFieldType >
FORCE_INLINE void	compute_full_deformation (const transform_type &linear1, DeformationField1Type &deform1, DeformationField2Type &deform2, const transform_type &linear2, OutputDeformationFieldType &deform_out)

template<class DeformationField1Type , class DeformationField2Type , class OutputDeformationFieldType >
FORCE_INLINE void	compute_full_deformation (std::string message, const transform_type &linear1, DeformationField1Type &deform1, DeformationField2Type &deform2, const transform_type &linear2, OutputDeformationFieldType &deform_out)

template<class WarpType >
FORCE_INLINE WarpType	compute_midway_deformation (WarpType &warp, const int from)

template<class WarpType , class TemplateType >
FORCE_INLINE WarpType	compute_full_deformation (WarpType &warp, TemplateType &template_image, const int from)

template<class ImageType >
void	displacement2deformation (ImageType &input, ImageType &output)

template<class ImageType >
void	deformation2displacement (ImageType &input, ImageType &output)

template<class HeaderType >
void	check_warp (const HeaderType &warp_header)

template<class HeaderType >
void	check_warp_full (const HeaderType &warp_header)

template<class InputWarpType >
transform_type	parse_linear_transform (InputWarpType &input_warps, std::string name)

FORCE_INLINE void	invert_deformation (Image< default_type > &deform_field, Image< default_type > &inv_deform_field, bool is_initialised=false, size_t max_iter=50, default_type error_tolerance=0.0001)

FORCE_INLINE void	invert_displacement_deformation (Image< default_type > &disp, Image< default_type > &inv_deform, bool is_initialised=false, size_t max_iter=50, default_type error_tolerance=0.0001)

FORCE_INLINE void	invert_displacement (Image< default_type > &disp_field, Image< default_type > &inv_disp_field, size_t max_iter=50, default_type error_tolerance=0.0001)

Function Documentation

◆ check_warp()

template<class HeaderType >

void MR::Registration::Warp::check_warp ( const HeaderType & warp_header )

inline

Definition at line 29 of file helpers.h.

◆ check_warp_full()

template<class HeaderType >

void MR::Registration::Warp::check_warp_full ( const HeaderType & warp_header )

inline

Definition at line 38 of file helpers.h.

◆ compose_linear_deformation()

template<class InputDeformationFieldType , class OutputDeformationFieldType >

FORCE_INLINE void MR::Registration::Warp::compose_linear_deformation	(	const transform_type &	transform,
		InputDeformationFieldType &	deform_in,
		OutputDeformationFieldType &	deform_out
	)

Definition at line 145 of file compose.h.

◆ compose_linear_displacement()

template<class DisplacementFieldType , class DeformationFieldType >

FORCE_INLINE void MR::Registration::Warp::compose_linear_displacement	(	const transform_type &	transform,
		DisplacementFieldType &	disp_in,
		DeformationFieldType &	deform_out
	)

Definition at line 137 of file compose.h.

◆ compute_full_deformation() [1/3]

template<class DeformationField1Type , class DeformationField2Type , class OutputDeformationFieldType >

FORCE_INLINE void MR::Registration::Warp::compute_full_deformation	(	const transform_type &	linear1,
		DeformationField1Type &	deform1,
		DeformationField2Type &	deform2,
		const transform_type &	linear2,
		OutputDeformationFieldType &	deform_out
	)

Definition at line 222 of file compose.h.

◆ compute_full_deformation() [2/3]

template<class DeformationField1Type , class DeformationField2Type , class OutputDeformationFieldType >

FORCE_INLINE void MR::Registration::Warp::compute_full_deformation	(	std::string	message,
		const transform_type &	linear1,
		DeformationField1Type &	deform1,
		DeformationField2Type &	deform2,
		const transform_type &	linear2,
		OutputDeformationFieldType &	deform_out
	)

Definition at line 233 of file compose.h.

◆ compute_full_deformation() [3/3]

template<class WarpType , class TemplateType >

FORCE_INLINE WarpType MR::Registration::Warp::compute_full_deformation	(	WarpType &	warp,
		TemplateType &	template_image,
		const int	from
	)

Definition at line 264 of file compose.h.

◆ compute_midway_deformation()

template<class WarpType >

FORCE_INLINE WarpType MR::Registration::Warp::compute_midway_deformation	(	WarpType &	warp,
		const int	from
	)

Definition at line 243 of file compose.h.

◆ deformation2displacement()

template<class ImageType >

void MR::Registration::Warp::deformation2displacement	(	ImageType &	input,
		ImageType &	output
	)

Definition at line 44 of file convert.h.

◆ displacement2deformation()

template<class ImageType >

void MR::Registration::Warp::displacement2deformation	(	ImageType &	input,
		ImageType &	output
	)

Definition at line 34 of file convert.h.

◆ parse_linear_transform()

template<class InputWarpType >

transform_type MR::Registration::Warp::parse_linear_transform	(	InputWarpType &	input_warps,
		std::string	name
	)

Definition at line 49 of file helpers.h.

◆ update_displacement()

FORCE_INLINE void MR::Registration::Warp::update_displacement	(	Image< default_type > &	input,
		Image< default_type > &	update,
		Image< default_type > &	output,
		default_type	step = `1.0`
	)

Definition at line 152 of file compose.h.

◆ update_displacement_scaling_and_squaring()

FORCE_INLINE void MR::Registration::Warp::update_displacement_scaling_and_squaring	(	Image< default_type > &	input,
		Image< default_type > &	update,
		Image< default_type > &	output,
		const default_type	step = `1.0`
	)

Definition at line 159 of file compose.h.

Classes

Functions