#include "dwi/tractography/SIFT2/tckfactor.h"

Inheritance diagram for MR::DWI::Tractography::SIFT2::TckFactor:

Friends
class	LineSearchFunctor

class	CoefficientOptimiserBase

class	CoefficientOptimiserGSS

class	CoefficientOptimiserQLS

class	CoefficientOptimiserIterative

class	FixelUpdater

class	RegularisationCalculator

Additional Inherited Members
Public Member Functions inherited from MR::DWI::Tractography::SIFT::Model< Fixel >
template<class Set >
	Model (Set &dwi, const DWI::Directions::FastLookupSet &dirs)

	Model (const Model &that)=delete

virtual	~Model ()

void	map_streamlines (const std::string &)

void	remove_excluded_fixels ()

void	check_TD ()

track_t	num_tracks () const

void	output_non_contributing_streamlines (const std::string &) const

Public Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
	ModelBase (Image< float > &dwi, const DWI::Directions::FastLookupSet &dirs)

	ModelBase (const ModelBase &)=delete

virtual	~ModelBase ()

void	perform_FOD_segmentation (Image< float > &)

void	scale_FDs_by_GM ()

void	map_streamlines (const std::string &)

virtual bool	operator() (const FMLS::FOD_lobes &in)

virtual bool	operator() (const Mapping::SetDixel &in)

default_type	calc_cost_function () const

default_type	mu () const

bool	have_act_data () const

void	output_proc_mask (const std::string &)

void	output_5tt_image (const std::string &)

void	output_all_debug_images (const std::string &) const

Public Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
	Fixel_TD_map (const Header &H, const DWI::Directions::FastLookupSet &directions)

	Fixel_TD_map (const Fixel_TD_map &)=delete

virtual	~Fixel_TD_map ()

virtual bool	operator() (const SetDixel &in)

Protected Member Functions inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
void	output_target_image (const std::string &) const

void	output_target_image_sh (const std::string &) const

void	output_target_image_fixel (const std::string &) const

void	output_tdi (const std::string &) const

void	output_tdi_null_lobes (const std::string &) const

void	output_tdi_sh (const std::string &) const

void	output_tdi_fixel (const std::string &) const

void	output_error_images (const std::string &, const std::string &, const std::string &) const

void	output_error_fixel_images (const std::string &, const std::string &) const

void	output_scatterplot (const std::string &) const

void	output_fixel_count_image (const std::string &) const

void	output_untracked_fixels (const std::string &, const std::string &) const

Protected Member Functions inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
size_t	dixel2fixel (const Dixel &) const

Protected Attributes inherited from MR::DWI::Tractography::SIFT::Model< Fixel >
std::string	tck_file_path

vector< TrackContribution * >	contributions

Protected Attributes inherited from MR::DWI::Tractography::SIFT::ModelBase< Fixel >
Image< float >	act_5tt

Image< float >	proc_mask

default_type	FOD_sum

default_type	TD_sum

bool	have_null_lobes

Protected Attributes inherited from MR::DWI::Tractography::Mapping::Fixel_TD_map< Fixel >
const DWI::Directions::FastLookupSet &	dirs

Protected Attributes inherited from MR::DWI::Fixel_map< Fixel >
vector< Fixel >	fixels