MR::DWI::Tractography::Mapping Namespace Reference

Namespaces
namespace	Gaussian

Classes
class	BufferScratchDump
class	Dixel
class	DixelMappingPlugin
class	Fixel_TD_map
class	MapWriter
class	MapWriterBase
class	SetDixel
class	SetVoxel
class	SetVoxelDEC
class	SetVoxelDir
class	SetVoxelExtras
class	SetVoxelTOD
class	TODMappingPlugin
class	TrackLoader
class	TrackMapperBase
class	TrackMapperTWI
class	TWDFCDynamicImagePlugin
class	TWDFCStaticImagePlugin
class	TWIFODImagePlugin
class	TWIImagePluginBase
class	TWIScalarImagePlugin
class	Voxel
class	VoxelDEC
class	VoxelDir
class	VoxelTOD

Enumerations
enum	contrast_t {   TDI , LENGTH , INVLENGTH , SCALAR_MAP ,   SCALAR_MAP_COUNT , FOD_AMP , CURVATURE , VECTOR_FILE }
enum	vox_stat_t { V_SUM , V_MIN , V_MEAN , V_MAX }
enum	tck_stat_t {   T_SUM , T_MIN , T_MEAN , T_MAX ,   T_MEDIAN , T_MEAN_NONZERO , GAUSSIAN , ENDS_MIN ,   ENDS_MEAN , ENDS_MAX , ENDS_PROD , ENDS_CORR }
enum	writer_dim {   UNDEFINED , GREYSCALE , DEC , DIXEL ,   TOD }

Functions
size_t	determine_upsample_ratio (const Header &, const float, const float)
size_t	determine_upsample_ratio (const Header &, const std::string &, const float)
size_t	determine_upsample_ratio (const Header &, const Tractography::Properties &, const float)
void	generate_header (Header &, const std::string &, const vector< default_type > &)
void	oversample_header (Header &, const vector< default_type > &)
template<typename T >
Eigen::Vector3i	round (const Eigen::Matrix< T, 3, 1 > &p)
template<class HeaderType >
bool	check (const Eigen::Vector3i &V, const HeaderType &H)
Eigen::Vector3d	vec2DEC (const Eigen::Vector3d &d)
std::ostream &	operator<< (std::ostream &, const Voxel &)
std::ostream &	operator<< (std::ostream &, const VoxelDEC &)
std::ostream &	operator<< (std::ostream &, const VoxelDir &)
std::ostream &	operator<< (std::ostream &, const Dixel &)
std::ostream &	operator<< (std::ostream &, const VoxelTOD &)

Variables
const char *	contrasts []
const char *	voxel_statistics []
const char *	track_statistics []
const char *	writer_dims []

Enumeration Type Documentation

contrast_t

enum MR::DWI::Tractography::Mapping::contrast_t

Enumerator
TDI
LENGTH
INVLENGTH
SCALAR_MAP
SCALAR_MAP_COUNT
FOD_AMP
CURVATURE
VECTOR_FILE

Definition at line 27 of file twi_stats.h.

tck_stat_t

enum MR::DWI::Tractography::Mapping::tck_stat_t

Enumerator
T_SUM
T_MIN
T_MEAN
T_MAX
T_MEDIAN
T_MEAN_NONZERO
GAUSSIAN
ENDS_MIN
ENDS_MEAN
ENDS_MAX
ENDS_PROD
ENDS_CORR

Definition at line 30 of file twi_stats.h.

vox_stat_t

enum MR::DWI::Tractography::Mapping::vox_stat_t

Enumerator
V_SUM
V_MIN
V_MEAN
V_MAX

Definition at line 28 of file twi_stats.h.

writer_dim

enum MR::DWI::Tractography::Mapping::writer_dim

Enumerator
UNDEFINED
GREYSCALE
DEC
DIXEL
TOD

Definition at line 43 of file writer.h.

Function Documentation

check()

template<class HeaderType >

bool MR::DWI::Tractography::Mapping::check ( const Eigen::Vector3i &  V, const HeaderType &  H  )

inline

Definition at line 45 of file voxel.h.

determine_upsample_ratio() [1/3]

size_t MR::DWI::Tractography::Mapping::determine_upsample_ratio	(	const Header &	,
		const float	,
		const float
	)

determine_upsample_ratio() [2/3]

size_t MR::DWI::Tractography::Mapping::determine_upsample_ratio	(	const Header &	,
		const std::string &	,
		const float
	)

determine_upsample_ratio() [3/3]

size_t MR::DWI::Tractography::Mapping::determine_upsample_ratio	(	const Header &	,
		const Tractography::Properties &	,
		const float
	)

generate_header()

void MR::DWI::Tractography::Mapping::generate_header	(	Header &	,
		const std::string &	,
		const vector< default_type > &
	)

operator<<() [1/5]

std::ostream & MR::DWI::Tractography::Mapping::operator<<	(	std::ostream &	,
		const Dixel &
	)

operator<<() [2/5]

std::ostream & MR::DWI::Tractography::Mapping::operator<<	(	std::ostream &	,
		const Voxel &
	)

operator<<() [3/5]

std::ostream & MR::DWI::Tractography::Mapping::operator<<	(	std::ostream &	,
		const VoxelDEC &
	)

operator<<() [4/5]

std::ostream & MR::DWI::Tractography::Mapping::operator<<	(	std::ostream &	,
		const VoxelDir &
	)

operator<<() [5/5]

std::ostream & MR::DWI::Tractography::Mapping::operator<<	(	std::ostream &	,
		const VoxelTOD &
	)

oversample_header()

void MR::DWI::Tractography::Mapping::oversample_header	(	Header &	,
		const vector< default_type > &
	)

round()

template<typename T >

Eigen::Vector3i MR::DWI::Tractography::Mapping::round ( const Eigen::Matrix< T, 3, 1 > &  p )

inline

Definition at line 38 of file voxel.h.

vec2DEC()

Eigen::Vector3d MR::DWI::Tractography::Mapping::vec2DEC ( const Eigen::Vector3d &  d )

inline

Definition at line 50 of file voxel.h.

Variable Documentation

contrasts

const char* MR::DWI::Tractography::Mapping::contrasts[]

extern

track_statistics

const char* MR::DWI::Tractography::Mapping::track_statistics[]

extern

voxel_statistics

const char* MR::DWI::Tractography::Mapping::voxel_statistics[]

extern

writer_dims

const char* MR::DWI::Tractography::Mapping::writer_dims[]

extern